PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020407-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 233aa    MW: 26222.8 Da    PI: 6.6879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020407-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.7e-09119159954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  WALNUT_00020407-RA 119 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 159
                         699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-14115168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-10116164No hitNo description
Gene3DG3DSA:4.10.280.103.7E-12116168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-6120159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDINNHNKLT NSGWNLELAI EEPILHNQNS LINSFWPNYP PIPQTHQILS ASNHIPITST  60
VPGNRMEEEE LEPEEELGAM KEMMYKIAAM QPVDIDPATI RKPKRRNVRI SDDPQSVAAR  120
HRRERISEKI RILQRLVPGG TKMDTASMLD EAIRYVKFLK RQIRLLQSTQ PPQGIGVSSG  180
RLLSGDWAST PNKLDCSTSS IDLIPTPGPE FNYAAGNQQG ETFSFNINKV ISD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9147621e-134KF914762.1 Morella rubra microsatellite ZJU161 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048332.12e-76Basic helix-loop-helix DNA-binding superfamily protein
TrEMBLA0A061DIQ02e-76A0A061DIQ0_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGVIT_04s0044g01040.t018e-73(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-48bHLH family protein